Reproducible Bio-image analysis pipelines with Python

by Anthony Vega (MPI-CBG, Scientific Computing Facility), Ivey Sebastian (MPI-CBG; Scientific Computing Facility)

Thursday 18 Sept 2025, 13:00 → 17:00 Europe/Berlin

Top Floor CSBD

Objectives: 

• Introduction on Image anlaysis
• How to use the python environmnent and  code libraries
• Choosing algorithms for your analysis
• Choosing analysis paarmeters
• Removing extraneous factors
• Finalising pipeline: testing for reproducibility

 

Level:  Intermediate

Format:  Instructor explains the material and does live-coding. Learners follow live-coding examples and solve exercises on their laptops.

Who can participate / Capacity: All CBG members. max 20 places.

Prerequisites:

• Basic idea of image anlysis
• Atleast beginner level experience with Python
• Basic idea of Jupyter notebook is a plus

 

This workshop is part of the workshop series on reproducibility and good IT practices offered by the Scientific Computing Facility in September 2025.